Fusion protein functionality prediction using genetic algorithm
Keywords:
Protein, Fusion protein, Protein Functionality, Genetic AlgorithmAbstract
A fusion gene, which is composed by fusing pieces of two distinct genes, gives rise to a protein. The body may naturally produce fusion genes by transferring DNA between chromosomes. For instance, the BCR-ABL gene, which is a fusion gene that creates the BCR-ABL fusion protein, is found in a few different types of leukemia. By combining genes or segments of genes from related or unrelated animals, fusion genes and proteins can be produced further. Real-time lab tests, however, are expensive and time-consuming for automated fusion protein functionality prediction. In order to address this issue, this research suggests a brand-new Fusion Protein Functionality Prediction (FPFP) approach based on the Genetic Algorithm (GA) technique. The results of the experiments showed that the FPFP method accurately predicts the functionality of fusion proteins.
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Cao, R., Freitas, C., Chan, L., Sun, M., Jiang, H., & Chen, Z. (2017). ProLanGO: protein function prediction using neural machine translation based on a recurrent neural network. Molecules, 22(10), 1732.
de Souza Vandenberghe, L. P., Karp, S. G., Pagnoncelli, M. G. B., von Linsingen Tavares, M., Junior, N. L., Diestra, K. V., ... & Soccol, C. R. (2020). Classification of enzymes and catalytic properties. In Biomass, Biofuels, Biochemicals (pp. 11-30). Elsevier.
Gene Ontology Consortium. (2019). The gene ontology resource: 20 years and still GOing strong. Nucleic acids research, 47(D1), D330-D338.
Gligorijević, V., Barot, M., & Bonneau, R. (2018). deepNF: deep network fusion for protein function prediction. Bioinformatics, 34(22), 3873-3881.
Gligorijević, V., Barot, M., & Bonneau, R. (2018). deepNF: deep network fusion for protein function prediction. Bioinformatics, 34(22), 3873-3881.
Irby, S. M., Pelaez, N. J., & Anderson, T. R. (2018). Anticipated learning outcomes for a biochemistry course-based undergraduate research experience to predict protein function from structure: Implications for assessment design. Biochemistry and Molecular Biology Education, 46(5), 478-492.
Jain, A., & Kihara, D. (2019). NNTox: gene ontology-based protein toxicity prediction using neural network. Scientific reports, 9(1), 1-10.
Lan, N., Jansen, R., & Gerstein, M. (2002). Toward a systematic definition of protein function that scales to the genome level: Defining a function in terms of interactions. Proceedings of the IEEE, 90(12), 1848-1858.
Liu, X. (2017). Deep recurrent neural network for protein function prediction from the sequence. arXiv preprint arXiv:1701.08318.
Ouzounis, C. A., Coulson, R. M., Enright, A. J., Kunin, V., & Pereira-Leal, J. B. (2003). Classification schemes for protein structure and function. Nature Reviews Genetics, 4(7), 508-519.
Rison, S. C., Hodgman, T. C., & Thornton, J. M. (2000). Comparison of functional annotation schemes for genomes. Functional & integrative genomics, 1(1), 56-69.
Seyyedsalehi, S. F., Soleymani, M., Rabiee, H. R., & Mofrad, M. R. (2021). PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks. Plos one, 16(2), e0244430.
Wan, C., & Jones, D. T. (2020). Protein function prediction is improved by creating synthetic feature samples with generative adversarial networks. Nature Machine Intelligence, 2(9), 540-550.
Zhao, Z., Zhang, H., Hu, M., Yang, N., Wang, H., Wang, C., ... & Gu, L. (2021). Protein Function Prediction with Deep Neural Learning.
Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., ... & Kihara, D. (2019). The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology, 20(1), 1-23.
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