Comparative synthetic study, in silico screening and biological evaluation of some substituted tetrahydropyrimidine-2-one derivatives as potential DHFR inhibitors
Keywords:
DHFR, tetrahydropyrimidine, Biginelli reaction, antibacterial activity, microwaveAbstract
In present study we have selected pyrimidine scaffold to design and develop some DHFR inhibitors as potential antibacterial and antifungal agents. The designed derivatives were first screened through ADMET property calculations and then those possess drug-likeness properties were subjected for the molecular docking studies. The derivatives which were found to be significant DHFR inhibition potential were subjected for the synthesis followed by spectral analysis and biological evaluation. From this virtual screening, it was concluded that all the compounds possess drug-like properties and hence were subjected to molecular docking studies. The selected derivatives were synthesized and subjected for in vitro biological evaluation. The comparative study for synthesis of the derivatives such as conventional, ultrasonic, microwave synthesis was carried out. It was also observed that yield of the compound was very good in microwave assisted synthesis i.e. 73.24% which is almost 30-40% more than that of the conventional and ultrasonic method. In mass spectrum it was observed that, product obtained through microwave method was completely pure and did not displayed any peak of starting material, whereas product obtained through conventional and ultrasonic method showed presence of starting material.
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Ahmed Elkanzi, N. A. (2020). Synthesis and Biological Activities of Some Pyrimidine Derivatives: A Review. Oriental Journal Of Chemistry, 36(6), 1001–1015. https://doi.org/10.13005/ojc/360602 DOI: https://doi.org/10.13005/ojc/360602
Anwar, K., Hussein, D., & Salih, J. (2020). Antimicrobial susceptibility testing and phenotypic detection of MRSA isolated from diabetic foot infection. International Journal of General Medicine, 13, 1349–1357. https://doi.org/10.2147/IJGM.S278574 DOI: https://doi.org/10.2147/IJGM.S278574
Banerjee, P., Eckert, A. O., Schrey, A. K., & Preissner, R. (2018). ProTox-II: A webserver for the prediction of toxicity of chemicals. Nucleic Acids Research, 46(W1), W257–W263. https://doi.org/10.1093/nar/gky318 DOI: https://doi.org/10.1093/nar/gky318
Bhat, A. R., Dongre, R. S., Naikoo, G. A., Hassan, I. U., & Ara, T. (2017). Proficient synthesis of bioactive annulated pyrimidine derivatives: A review. Journal of Taibah University for Science, 11(6), 1047–1069. https://doi.org/10.1016/j.jtusci.2017.05.005 DOI: https://doi.org/10.1016/j.jtusci.2017.05.005
Chaudhari, R. N., Khan, S. L., Chaudhary, R. S., Jain, S. P., & Siddiqui, F. A. (2020). Β-Sitosterol: Isolation from Muntingia Calabura Linn Bark Extract, Structural Elucidation And Molecular Docking Studies As Potential Inhibitor of SARS-CoV-2 Mpro (COVID-19). Asian Journal of Pharmaceutical and Clinical Research, 13(5), 204–209. https://doi.org/10.22159/ajpcr.2020.v13i5.37909 DOI: https://doi.org/10.22159/ajpcr.2020.v13i5.37909
Daina, A., Michielin, O., & Zoete, V. (2017). SwissADME: A free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules. Scientific Reports, 7. https://doi.org/10.1038/srep42717 DOI: https://doi.org/10.1038/srep42717
Dallakyan, S., & Olson, A. J. (2015). Small-molecule library screening by docking with PyRx. Methods in Molecular Biology, 1263(1263), 243–250. https://doi.org/10.1007/978-1-4939-2269-7_19 DOI: https://doi.org/10.1007/978-1-4939-2269-7_19
Jouhar, L., Jaafar, R. F., Nasreddine, R., Itani, O., Haddad, F., Rizk, N., & Hoballah, J. J. (2020). Microbiological profile and antimicrobial resistance among diabetic foot infections in Lebanon. International Wound Journal, 17(6), 1764–1773. https://doi.org/10.1111/iwj.13465 DOI: https://doi.org/10.1111/iwj.13465
Khan, A., Unnisa, A., Sohel, M., Date, M., Panpaliya, N., Saboo, S. G., Siddiqui, F., & Khan, S. (2022). Investigation of phytoconstituents of Enicostemma littorale as potential glucokinase activators through molecular docking for the treatment of type 2 diabetes mellitus. In Silico Pharmacology, 10(1). https://doi.org/10.1007/s40203-021-00116-8 DOI: https://doi.org/10.1007/s40203-021-00116-8
Khan, S., Kale, M., Siddiqui, F., & Nema, N. (2021). Novel pyrimidine-benzimidazole hybrids with antibacterial and antifungal properties and potential inhibition of SARS-CoV-2 main protease and spike glycoprotein. Digital Chinese Medicine, 4(2), 102–119. https://doi.org/10.1016/j.dcmed.2021.06.004 DOI: https://doi.org/10.1016/j.dcmed.2021.06.004
Khan, S.L., Siddiqui, F. A., Jain, S. P., & Sonwane, G. M. (2020). Discovery of Potential Inhibitors of SARS-CoV-2 (COVID-19) Main Protease (Mpro) from Nigella Sativa (Black Seed) by Molecular Docking Study. Coronaviruses, 2(3), 384–402. https://doi.org/10.2174/2666796701999200921094103 DOI: https://doi.org/10.2174/2666796701999200921094103
Khan, Sharuk L., Siddiqui, F. A., Shaikh, M. S., Nema, N. V., & Shaikh, A. A. (2021). Discovery of potential inhibitors of the receptor-binding domain (RBD) of pandemic disease-causing SARS-CoV-2 Spike Glycoprotein from Triphala through molecular docking. Current Chinese Chemistry, 01. https://doi.org/10.2174/2666001601666210322121802 DOI: https://doi.org/10.2174/2666001601666210322121802
Khan, Sharuk L., Sonwane, G. M., Siddiqui, F. A., Jain, S. P., Kale, M. A., & Borkar, V. S. (2020). Discovery of Naturally Occurring Flavonoids as Human Cytochrome P450 (CYP3A4) Inhibitors with the Aid of Computational Chemistry. Indo Global Journal of Pharmaceutical Sciences, 10(04), 58–69. https://doi.org/10.35652/igjps.2020.10409 DOI: https://doi.org/10.35652/IGJPS.2020.10409
Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., Zaslavsky, L., Zhang, J., & Bolton, E. E. (2021). PubChem in 2021: New data content and improved web interfaces. Nucleic Acids Research, 49(D1), D1388–D1395. https://doi.org/10.1093/nar/gkaa971 DOI: https://doi.org/10.1093/nar/gkaa971
Krzywinski, M., & Altman, N. (2013). Points of significance: Significance, P values and t-tests. Nature Methods, 10(11), 1041–1042. https://doi.org/10.1038/nmeth.2698 DOI: https://doi.org/10.1038/nmeth.2698
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2012). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. In Advanced Drug Delivery Reviews (Vol. 64, Issue SUPPL., pp. 4–17). https://doi.org/10.1016/j.addr.2012.09.019 DOI: https://doi.org/10.1016/j.addr.2012.09.019
Loi, V. Van, Huyen, N. T. T., Busche, T., Tung, Q. N., Gruhlke, M. C. H., Kalinowski, J., Bernhardt, J., Slusarenko, A. J., & Antelmann, H. (2019). Staphylococcus aureus responds to allicin by global S-thioallylation – Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress. Free Radical Biology and Medicine, 139, 55–69. https://doi.org/10.1016/j.freeradbiomed.2019.05.018 DOI: https://doi.org/10.1016/j.freeradbiomed.2019.05.018
Mittersteiner, M., Farias, F. F. S., Bonacorso, H. G., Martins, M. A. P., & Zanatta, N. (2021). Ultrasound-assisted synthesis of pyrimidines and their fused derivatives: A review. Ultrasonics Sonochemistry, 79. https://doi.org/10.1016/j.ultsonch.2021.105683 DOI: https://doi.org/10.1016/j.ultsonch.2021.105683
Murali, T. S., Kavitha, S., Spoorthi, J., Bhat, D. V., Prasad, A. S. B., Upton, Z., Ramachandra, L., Acharya, R. V., & Satyamoorthy, K. (2014). Characteristics of microbial drug resistance and its correlates in chronic diabetic foot ulcer infections. Journal of Medical Microbiology, 63, 1377–1385. https://doi.org/10.1099/jmm.0.076034-0 DOI: https://doi.org/10.1099/jmm.0.076034-0
Nepali, K., Sharma, S., Sharma, M., Bedi, P. M. S., & Dhar, K. L. (2014). Rational approaches, design strategies, structure activity relationship and mechanistic insights for anticancer hybrids. European Journal of Medicinal Chemistry, 77, 422–487. https://doi.org/10.1016/j.ejmech.2014.03.018 DOI: https://doi.org/10.1016/j.ejmech.2014.03.018
Nerkar, A. U. (2021). Use of Pyrimidine and Its Derivative in Pharmaceuticals: A Review. Journal of Advanced Chemical Sciences, 7(2), 729–732. https://doi.org/10.30799/jacs.239.21070203 DOI: https://doi.org/10.30799/jacs.239.21070203
Rappé, A. K., Casewit, C. J., Colwell, K. S., Goddard, W. A., & Skiff, W. M. (1992). UFF, a Full Periodic Table Force Field for Molecular Mechanics and Molecular Dynamics Simulations. Journal of the American Chemical Society, 114(25), 10024–10035. https://doi.org/10.1021/ja00051a040 DOI: https://doi.org/10.1021/ja00051a040
San Diego: Accelrys Software Inc. (2012). Discovery Studio Modeling Environment, Release 3.5. Accelrys Software Inc. https://www.3dsbiovia.com/about/citations-references/
Sánchez-Sánchez, M., Cruz-Pulido, W. L., Bladinieres-Cámara, E., Alcalá-Durán, R., Rivera-Sánchez, G., & Bocanegra-García, V. (2017). Bacterial Prevalence and Antibiotic Resistance in Clinical Isolates of Diabetic Foot Ulcers in the Northeast of Tamaulipas, Mexico. International Journal of Lower Extremity Wounds, 16(2), 129–134. https://doi.org/10.1177/1534734617705254 DOI: https://doi.org/10.1177/1534734617705254
Shahi, S. K., & Kumar, A. (2016). Isolation and genetic analysis of multidrug resistant bacteria from diabetic foot ulcers. Frontiers in Microbiology, 6(JAN). https://doi.org/10.3389/fmicb.2015.01464 DOI: https://doi.org/10.3389/fmicb.2015.01464
Shen, Z. L., Xu, X. P., & Ji, S. J. (2010). Brønsted base-catalyzed one-pot three-component Biginelli-type reaction: An efficient synthesis of 4,5,6-triaryl-3,4-dihydropyrimidin-2(1H)-one and mechanistic study. Journal of Organic Chemistry, 75(4), 1162–1167. https://doi.org/10.1021/jo902394y DOI: https://doi.org/10.1021/jo902394y
Shntaif, A. H., Khan, S., Tapadiya, G., Chettupalli, A., Saboo, S., Shaikh, M. S., Siddiqui, F., & Amara, R. R. (2021). Rational drug design, synthesis, and biological evaluation of novel N-(2-arylaminophenyl)-2,3-diphenylquinoxaline-6-sulfonamides as potential antimalarial, antifungal, and antibacterial agents. Digital Chinese Medicine, 4(4), 290–304. https://doi.org/10.1016/j.dcmed.2021.12.004 DOI: https://doi.org/10.1016/j.dcmed.2021.12.004
Siddiqui, F. A., Khan, S. L., Marathe, R. P., & Nema, N. V. (2021). Design, Synthesis, and In Silico Studies of Novel N-(2-Aminophenyl)-2,3- Diphenylquinoxaline-6-Sulfonamide Derivatives Targeting Receptor- Binding Domain (RBD) of SARS-CoV-2 Spike Glycoprotein and their Evaluation as Antimicrobial and Antimalarial Agents. Letters in Drug Design & Discovery, 18(9), 915–931. https://doi.org/10.2174/1570180818666210427095203 DOI: https://doi.org/10.2174/1570180818666210427095203
Todd, M. J., & Gomez, J. (2001). Enzyme kinetics determined using calorimetry: A general assay for enzyme activity? Analytical Biochemistry, 296(2), 179–187. https://doi.org/10.1006/abio.2001.5218 DOI: https://doi.org/10.1006/abio.2001.5218
Verma, V., Joshi, C. P., Agarwal, A., Soni, S., & Kataria, U. (2020). A Review on Pharmacological Aspects of Pyrimidine Derivatives. Journal of Drug Delivery and Therapeutics, 10(5), 358–361. https://doi.org/10.22270/jddt.v10i5.4295 DOI: https://doi.org/10.22270/jddt.v10i5.4295
Wróbel, A., Arciszewska, K., Maliszewski, D., & Drozdowska, D. (2020). Trimethoprim and other nonclassical antifolates an excellent template for searching modifications of dihydrofolate reductase enzyme inhibitors. Journal of Antibiotics, 73(1), 5–27. https://doi.org/10.1038/s41429-019-0240-6 DOI: https://doi.org/10.1038/s41429-019-0240-6
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